The program has been delayed since last fall because of problems with software reliability and staff training.
But critics of the new health records modernization plan insist the current system can be improved instead of scrapped.
VA Deputy Secretary Donald Remy to depart, after serving in the post since July 2021.
Dr. Terry Adirim has served in the role since late 2021 and will leave on Feb. 25.
The company behind VA's controversial health records project insists the work can still be finished in a way that benefits veterans and taxpayers.
New legislation would block further deployments of the controversial system until VA leaders can promise permanent improvements.
Rollouts of the controversial system are expected to resume next summer.
Republican lawmakers want more details on the deaths and assurances that the new VA records system won't cause more harm.
At least a thousand people downloaded the app, which delivered updates for troops at the National Training Center.
Sgt. Nahla Beard broke the record by two burpees. And she did it more than once.
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