The squadron returned from deployment last month with the rest of the Gerald R. Ford carrier strike group.
The battalion executive officer is serving as the interim commander.
Capt. Geoffry Patterson became commanding officer of the submarine’s blue crew in May 2022.
Both teams are battling to reach a 6-6 record to cap the season.
Cmdr. Adam K. Pendleton took command of the unit about six months ago.
As part of the American Athletic Conference, Army will have more post-season bowl game options.
The Navy provided no explanation for relieving Harney of command in a brief statement Friday night.
The Navy relieved Cmdr. Steven Green “due to a loss of confidence” in his ability to lead.
As with nearly all commanding officer firings, the Navy declined to say why Capt. Danielle DeFant was relieved of command.
The Navy provided few details regarding why Cmdr. Brandon DeHaan was relieved on Sept. 1.
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